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    ZR small-RNA PAGE Recovery Kit


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    Cat # Name Size
    R1070 ZR small-RNA PAGE Recovery Kit 20 Preps

    Highlights

    • Efficient: Recovery of ss- or ds- RNA (and DNA) fragments (17-200 nt) from up to 20% (w/v) polyacrylamide gels.
    • Concentrated: Up to 10 µg sample in ≥ 6 µl elution.
    • Compatible with up to 25% (w/v) polyacrylamide.
    Description & Documents Specifications FAQ Components Citations

    Documents

    Product Description

    The ZR small-RNA PAGE Recovery Kit provides an easy and efficient method for the extraction of high quality small RNAs from polyacrylamide gels (native and/or denatured). The ZR small-RNA™ PAGE Recovery Kit is a refinement of the "crush and soak" method that incorporates a unique buffer system together with Zymo-Spin column technologies for improved recovery and added convenience. The recovered RNA can be concentrated into volumes as small as 6 µl, making it ideal for many downstream enzymatic reactions and manipulations.

    Documents

    Technical Specifications

    Equipment Microcentrifuge, 37°C-65°C heat source, dry ice or -80°C freezer
    Purity RNA is ready for all subsequent analysis and molecular manipulation
    Sample Source RNA or DNA fragments (17-200 nt) resolved in PAGE gels (up to 25%), also compatible with TBE-, denatured, urea PAGE gels. Compatible with ethidium bromide or ssRNA-specific dyes (e.g. GelStar).
    Size Range RNAs 17-200 nt (fragments 17-28 nt is ≥50 % recovery)
    Yield 10 µg RNA (binding capacity), ≥6 µl (elution volume)

    Resources

    The recovery rate for fragments 17 to 28 nucleotides is ≥50 %.

    Yes, the kit is compatible with both single- or double-stranded RNA (and DNA) fragments.

    Yes. Most customer’s do not use PAGE gels for to visualize fragments > 200 nucleotides, but it will be compatible with the kit.

    Yes, this kit is compatible with TBE-Urea PAGE gels.

    There is no designated upper limit, however it is always more optimal to start with keeping the amount of excised gel as low as possible prior to proceeding with the purification procedure, and scaling up when optimizing gel input amount.

    Yes, the kit efficiently removes unincorporated fluorescent dyes, radiolabeled dNTP’s and Biotin.

    Cat # Name Size
    R1003-3-6 RNA Wash Buffer 6 ml
    C1001-50 Collection Tubes 50 Pack
    R1060-2-10 RNA Prep Buffer 10 ml
    R1070-1-10 RNA Recovery Buffer 10 ml
    R1070-2-20 RNA MAX Buffer 20 ml
    W1001-1 DNase/RNase-Free Water 1 ml
    H1001 Squisher-Single 10 Pack
    C1007-50 Zymo-Spin IV Columns 50 Pack

    Uncleaved RNA transcripts were extracted from denaturing (8.3M ura) 10% polyacrylamide gel using the ZR small-RNA PAGE Recovery kit. This facilitates the generation of ribozyme-based control devices for gene regulatory activities.

    Liang JC, et al. A high-throughput, quantitative cell-based screen for efficient tailoring of RNA device activity. Nucleic Acids Research. 2012.

    The ZR Small-RNA PAGE Recovery kit was used to gel purify short RNAs (50-250 bp) from isolated total RNA on a 15% TBE Urea gel for downstream quantitative PCR.

    Byun, JS et al. ELL facilitates RNA polymerase II pause site entry and release. Nature Communications. 2012.

    In vitro transcribed short hairpin RNA constructs were recovered from 20% denaturing polyacrylamide gels using the ZR small-RNA PAGE Recovery kit. This was used to show that influenza A virus panhandle structure could bind to retinoic acid-inducible gene I (RIG-I) and affect type I interferon production.

    Liu, GQ et al. Influenza A Virus Panhandle Structure Is Directly Involved in RIG-I Activation and Interferon Induction. Journal of Virology. 2015.

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